Survival-associated eQTLs across different cancer types
We identified 22,212 eQTLs associated with patient overall survival across different cancer types at FDR < 0.05.
|
Cancer type
|
SNP ID
|
SNP position (hg19)
|
Alleles (A/a)
|
log-rank test p-value
|
Sample size
|
Median survival time AA
|
Median survival time Aa
|
Median survival time aa
|
|
|---|---|---|---|---|---|---|---|---|---|
| LGG | rs6062562 | chr20:62502618 | A/G | 5.45E-13 | 403 | 15.2 | 15.37 | 5.4 | KM Plot |
| LGG | rs6062563 | chr20:62503279 | A/G | 4.66E-13 | 404 | 15.2 | 15.8 | 5.4 | KM Plot |
| LGG | rs6062707 | chr20:61478846 | G/A | 3.2E-6 | 395 | 15.7 | 15.67 | 5.5 | KM Plot |
| LGG | rs6062708 | chr20:61479496 | C/G | 3.2E-6 | 395 | 15.7 | 15.67 | 5.5 | KM Plot |
| LGG | rs6062709 | chr20:61482466 | C/T | 4.05E-6 | 391 | 15.67 | 16.27 | 5.5 | KM Plot |
| LGG | rs6062716 | chr20:61486950 | C/T | 3.24E-6 | 390 | 15.73 | 15.37 | 5.5 | KM Plot |
| LGG | rs6062718 | chr20:61493620 | C/T | 3.16E-6 | 399 | 15.67 | 15.13 | 5.5 | KM Plot |
| LGG | rs60714220 | chr6:46927254 | AAGAG/A | 1.91E-5 | 402 | 15.03 | 16.1 | 12.5 | KM Plot |
| LGG | rs60766032 | chr2:29247679 | T/C | 0.000142 | 404 | 14.57 | 21.13 | 4.15 | KM Plot |
| LGG | rs60883334 | chr10:72242896 | A/G | 5.77E-5 | 401 | 15.03 | 17.73 | 8.52 | KM Plot |
| LGG | rs6089808 | chr20:61494917 | A/C | 3.51E-6 | 390 | 15.67 | 15.28 | 5.5 | KM Plot |
| LGG | rs6090147 | chr20:61494915 | C/A | 3.51E-6 | 390 | 15.67 | 15.28 | 5.5 | KM Plot |
| LGG | rs60907340 | chr10:122669855 | CAG/C | 0.00019 | 401 | 16.37 | 14.8 | 17.67 | KM Plot |
| LGG | rs60909394 | chr6:36054932 | C/T | 9.43E-10 | 406 | 15.67 | 15.15 | 6.15 | KM Plot |
| LGG | rs6092785 | chr20:37254521 | C/G | 1.76E-7 | 404 | 15.7 | 14.48 | 6.83 | KM Plot |